SNP Profiles of MAN 15/2 [BRA] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CT	CC	GG	TT	AT	CC	CC	AG	GT	AG	CT	AA
1._RUQ_86	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
2._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
3._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
4._RUQ_86	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
5._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
6._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
7._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
8._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
9._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
10._GC-05-072-2-23	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
11._GC-05-072-2-23	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
12._GC-05-072-2-23	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
13._GC-05-072-2-23	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
14._GC-05-072-2-23	_	_	_	_	_	_	_	CC	_	_	_	AA	_	_
15._MAN15/2[BRA]	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_
16._MAN_15_/2_[BRA]	_	_	_	_	_	_	_	CC	_	_	_	GG	_	_
17._RUQ_86	_	_	_	_	_	_	_	CC	_	_	_	AG	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	AA	CT	AC	CT	AC	GG	GG	AT	AC	CT	TT	AG	CC
1._RUQ_86	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
2._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
3._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	GG	_	AC	_	_	_	_
4._RUQ_86	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
5._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
6._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
7._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
8._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
9._MAN_15_/2_[BRA]	_	_	_	_	_	AC	_	CG	_	AC	_	_	_	_
10._GC-05-072-2-23	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
11._GC-05-072-2-23	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
12._GC-05-072-2-23	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
13._GC-05-072-2-23	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
14._GC-05-072-2-23	AG	_	_	_	_	AC	_	CG	_	AC	CT	_	_	_
15._MAN15/2[BRA]	_	_	_	_	_	_	_	CG	_	AC	CT	_	_	_
16._MAN_15_/2_[BRA]	_	_	_	_	_	CC	_	CG	_	AA	_	_	_	_
17._RUQ_86	AG	_	_	_	_	AC	_	CG	_	AC	AG	_	_	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	CG	CC	GG	AG	TT	TT	AC	AA	TT	GG	AG	CC	AA
1._RUQ_86	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
2._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
3._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
4._RUQ_86	_	_	CC	GG	AG	_	_	AC	_	_	GG	-	_	AA
5._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
6._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
7._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
8._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
9._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
10._GC-05-072-2-23	AA	_	CC	GG	AG	_	_	AC	_	GG	GG	GG	_	AA
11._GC-05-072-2-23	AA	_	CC	GG	AG	_	_	AC	_	GG	GG	GG	_	AA
12._GC-05-072-2-23	AA	_	CC	GG	AG	_	_	AC	_	GG	GG	GG	_	AA
13._GC-05-072-2-23	AA	_	CC	GG	AG	_	_	AC	_	GG	GG	GG	_	AA
14._GC-05-072-2-23	AA	_	CC	GG	AG	_	_	AC	_	GG	GG	GG	_	AA
15._MAN15/2[BRA]	_	_	_	_	_	_	_	_	_	_	CC	_	_	_
16._MAN_15_/2_[BRA]	AA	_	_	GG	_	_	_	_	_	_	GG	_	_	AA
17._RUQ_86	_	_	_	CC	AG	_	_	AC	_	CC	CC	AG	_	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	TT	AA	CC	AG	TT	TT	GT	AA	GT	GG	AT	AG	GG
1._RUQ_86	_	_	_	_	AG	_	TT	_	_	GT	_	_	_	_
2._MAN_15_/2_[BRA]	_	_	_	_	AG	_	TT	_	_	GT	_	_	_	_
3._MAN_15_/2_[BRA]	_	_	_	_	AG	_	TT	_	_	GT	_	_	_	_
4._RUQ_86	CC	_	_	_	_	_	_	_	_	-	_	_	_	_
5._MAN_15_/2_[BRA]	_	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
6._MAN_15_/2_[BRA]	_	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
7._MAN_15_/2_[BRA]	_	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
8._MAN_15_/2_[BRA]	_	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
9._MAN_15_/2_[BRA]	_	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
10._GC-05-072-2-23	CC	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
11._GC-05-072-2-23	CC	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
12._GC-05-072-2-23	CC	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
13._GC-05-072-2-23	CC	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
14._GC-05-072-2-23	CC	_	_	_	GG	_	TT	_	_	GT	_	_	_	_
15._MAN15/2[BRA]	_	_	_	_	_	_	_	_	_	_	_	_	_	_
16._MAN_15_/2_[BRA]	_	_	_	_	AA	_	_	_	_	TT	_	_	_	_
17._RUQ_86	_	_	_	_	AG	_	_	_	_	AA	_	_	_	_

	57	58	59
_Input profile	CG	CT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_86	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._RUQ_86	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._MAN_15_/2_[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-05-072-2-23	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-05-072-2-23	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-05-072-2-23	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-05-072-2-23	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-072-2-23	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MAN15/2[BRA]	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MAN_15_/2_[BRA]	GG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_86	CG	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA] RUQ_86

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

1._MAN_15_/2_[BRA] RUQ_86

identical
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

identical
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

identical
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

6._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

7._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

8._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

9._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

11._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

13._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

14._MAN_15_/2_[BRA] GC-05-072-2-23

85.7 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

15._MAN_15_/2_[BRA] MAN15/2[BRA]

78.6 %
7 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

70.8 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1253	53	TcSNP1275	54	TcSNP1293	55	TcSNP1401
56	TcSNP1404	57	TcSNP1458	58	TcSNP1524	59	TcSNP1527